FastQCFastQC Report
Wed 8 May 2024
EGAF00007961655

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961655
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences482348
Total Bases14.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25410.5267980793949596No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8450.17518472140446315No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6780.14056241551742726No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6760.14014777712357054No Hit
GATGGCGAACACCGTCGTCACCGTGCCCACC5230.10842793999353165No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)