FastQCFastQC Report
Wed 8 May 2024
EGAF00007961657

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961657
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503033
Total Bases15.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8320.16539670359598674No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC7200.14313176272729622No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6740.1339872334419412No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6350.1262342629608793No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5570.11072832199875554No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)