FastQCFastQC Report
Wed 8 May 2024
EGAF00007961659

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961659
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484603
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24710.5099019197157261No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8540.17622672579410362No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7430.1533213785304672No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6630.13681302014226077No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5450.1124631915196563No Hit
GATGGCGAACACCGTCGTCACCGTGCCCACC4880.10070098616805923No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)