FastQCFastQC Report
Wed 8 May 2024
EGAF00007961663

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961663
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467513
Total Bases14.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33390.7142047386917584No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG24580.5257607809836304No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA13680.2926121840462191No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13040.27892272514347194No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC12750.2727196890781647No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12720.2720779956920984No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC12090.2586024345847067No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC10080.21560897771826668No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC9750.2085503504715377No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8350.17860465912177842No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8040.17197382746576031No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7910.1691931561261398No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7850.16790976935400725No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7310.15635928840481442No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6990.14951455895344087No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC6900.14758947879524204No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6650.14224203391135648No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6000.12833867721325395No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5780.12363292571543465No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4800.10267094177060317No Hit

[OK]Adapter Content

Adapter graph