FastQCFastQC Report
Wed 8 May 2024
EGAF00007961665

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961665
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487510
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT36480.748292342721175No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15180.31137822813891No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA14600.29948103628643513No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC13800.2830711164899182No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13360.2740456606018338No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC12450.2553793768332957No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC11000.22563639720210868No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC10210.20943160140304815No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8730.1790732497794917No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8670.17784250579475294No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8520.174765645832906No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC7980.163688949970257No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7770.1593813460236713No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7480.1534327500974339No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7200.14768927816865296No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7080.1452277901991754No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6610.13558696231872167No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6310.1294332423950278No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC6130.12574101044081148No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5280.10830547065701215No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5070.10399786671042646No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)