FastQCFastQC Report
Wed 8 May 2024
EGAF00007961667

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961667
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471450
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35270.7481175098101601No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25640.5438540672393679No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA14090.2988652030968289No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13400.28422950471948244No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC12560.2664121327818432No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12360.26216990136811963No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC11930.25304910382861384No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC10350.21953547566019727No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC9810.20808145084314347No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8570.18177961607805704No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8440.1790221656591367No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8110.17202248382649274No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8090.17159826068512035No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC7220.15314455403542265No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7210.15293244246473645No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7140.1514476614699332No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6660.1412663060769965No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5860.12429738042210202No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5730.12153993000318167No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4940.10478311591897338No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4820.10223777707073921No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4740.10054088450524976No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)