FastQCFastQC Report
Wed 8 May 2024
EGAF00007961669

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961669
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485067
Total Bases15 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27440.5656950483129135No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13400.2762504973539738No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9140.18842757804591945No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8460.17440889609064314No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8390.17296579647760002No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7090.14616537509251298No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6530.1346205781881678No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6030.1243127238092882No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA6000.12369425254655543No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5590.11524181195587413No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)