FastQCFastQC Report
Wed 8 May 2024
EGAF00007961670

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961670
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467217
Total Bases20.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11500.24613830404287518No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10700.22901563941380557No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9820.21018070832182906No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7560.16180918074470751No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7370.15774254789530348No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7300.15624431474025988No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5800.12413931856075443No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5560.11900251917203356No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT4900.10487632085305115No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)