FastQCFastQC Report
Wed 8 May 2024
EGAF00007961671

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961671
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences467217
Total Bases14.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26200.5607672666020286No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23470.5023361735553287No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12340.2641171019033982No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8420.1802160452209573No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7760.1660898469019749No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7650.16373548051547782No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6410.13719535034042No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6140.131416451028109No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5250.11236748662826908No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5220.11172538670467898No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)