FastQCFastQC Report
Wed 8 May 2024
EGAF00007961672

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961672
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489255
Total Bases21.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11740.23995666881278677No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA11460.23423368182236257No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC9980.20398360773012028No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8020.16392269879715077No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7790.1592216737693023No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7240.14798009218096903No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6520.13326383991987817No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5630.11507291698602978No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5570.11384656263093888No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)