FastQCFastQC Report
Wed 8 May 2024
EGAF00007961673

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961673
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences489255
Total Bases15.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28420.580883179528058No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12570.25692123739154427No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8600.1757774575630295No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8280.16923690100254468No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8230.16821493903996892No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6990.14287028236809027No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6480.13244627034981757No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5820.11895637244381764No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5690.1162992713411207No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5630.11507291698602978No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)