FastQCFastQC Report
Wed 8 May 2024
EGAF00007961675

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961675
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470016
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26850.5712571486928104No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23360.4970043572984749No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12640.2689270152505447No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8930.18999353213507625No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8210.17467490468409586No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6900.14680351307189543No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6210.1321231617647059No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5820.12382557189542483No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5290.1125493600217865No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5210.11084729030501089No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)