FastQCFastQC Report
Wed 8 May 2024
EGAF00007961676

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961676
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440417
Total Bases19.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC25560.5803590687916225No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT19960.45320684714713555No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA19590.4448057182170534No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA19390.44026456744403597No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA16700.3791860895469521No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14450.32809814335050647No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12660.2874548439320008No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12130.27542079438350475No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11390.2586185365233404No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9600.21797523710483474No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9000.20435178478578256No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8450.19186362015998473No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7440.16893080875624691No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7140.16211908259672084No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6780.15394501120528953No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6270.14236507673409518No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT5530.12556281887393084No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5510.1251087037966291No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5350.1214757831782152No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5060.11489111455733998No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4810.10921467609106823No Hit
CTGGCACAGAGAATCACGGTTGGAGCGTTTGGTCGCTTCGTCCA4720.10717115824321043No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4700.10671704316590869No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)