FastQCFastQC Report
Wed 8 May 2024
EGAF00007961677

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961677
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440417
Total Bases13.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC33370.7576910064779516No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA30190.6854867091869751No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT23260.5281358349019225No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG20760.4713714502392051No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA20720.4704632200846016No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG19370.4398104523667343No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC13460.30561944702407035No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13180.299261835941846No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12810.29086070701176386No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11860.26929024083993125No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11180.25385032821167214No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10160.23069045926928344No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8950.20321649709252823No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8920.2025353244765756No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7230.16416260044457867No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6840.15530735643719476No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6610.15008503304822474No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA6340.14395447950465126No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5750.13055808472424996No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5720.12987691210829738No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5410.12283812841012041No Hit
CTGGCTGAAAACGGTCACAACGTATGGGCAC4990.11330171178678389No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG4780.10853350347511563No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4480.10172177731558954No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)