FastQCFastQC Report
Wed 8 May 2024
EGAF00007961678

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961678
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences424393
Total Bases18.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC25470.6001512748796517No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT19230.45311774699394197No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA18130.42719837509101233No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA17880.4213076087494374No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15800.3722964327875342No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13600.320457688981675No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12690.2990152994983423No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11150.26272817883424093No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA10890.256601781839003No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8430.1986366410379059No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA8060.18991830685237504No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8030.18921141489138604No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8010.18874015358406004No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6460.15221740226629563No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6310.14868294246135066No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6110.14397032938809076No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5610.13218879670494094No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5560.13101064343662597No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5530.13030375147563697No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT5350.12606239970970304No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4720.11121766852893428No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4700.11074640722160828No Hit
CTGGCACAGAGAATCACGGTTGGAGCGTTTGGTCGCTTCGTCCA4650.10956825395329328No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)