FastQCFastQC Report
Wed 8 May 2024
EGAF00007961679

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961679
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences424393
Total Bases13.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC33180.7818225088538219No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA29260.6894552926179273No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21090.4969450485752593No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT20990.4945887420386293No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG20090.47338198320895963No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA19150.451232701764638No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG18690.4403936916961402No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12830.3023141286496243No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12250.28864755073717047No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12240.2884119200835075No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10670.2514179074584171No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10220.24081452804358225No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10110.23822259085328928No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT9010.21230321895035967No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8330.1962803345012759No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6630.15622312337856656No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6580.1550449701102516No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6400.15080361834431766No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA6050.14255654546611277No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5970.14067150023680883No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5480.129125598207322No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5220.12299920121208409No Hit
CTGGCTGAAAACGGTCACAACGTATGGGCAC4900.1154590202948682No Hit

[OK]Adapter Content

Adapter graph