FastQCFastQC Report
Wed 8 May 2024
EGAF00007961680

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961680
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443636
Total Bases19.5 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC25890.5835865439233967No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT20210.45555365209315746No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA19220.4332380600311967No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA19130.43120936984374575No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA16480.371475714324356No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14640.330000270492025No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13720.30926254857585944No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT12190.27477481538919296No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11760.26508218449359383No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9020.2033198387867531No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8290.18686490726631744No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT7990.18010260664148087No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7620.17176243587084908No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6830.1539550442254461No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT6430.14493864339233065No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6420.14471323337150277No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5740.1293853519552065No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5560.12532797158030456No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT5460.1230738713720257No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5360.12081977116374686No Hit
CTGGCACAGAGAATCACGGTTGGAGCGTTTGGTCGCTTCGTCCA4610.10391401960165542No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC4450.10030745926840924No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4440.10008204924758135No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)