FastQCFastQC Report
Wed 8 May 2024
EGAF00007961681

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961681
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443636
Total Bases13.7 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC33200.7483612691485813No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA31480.7095907455661848No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT22230.5010864763003904No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG21430.4830536746341595No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA20840.4697544834053143No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG19360.43639380032278713No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13750.3099387786383431No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC13340.30069696778439986No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG13090.29506171726370267No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11460.25831988386875726No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10650.2400616721816985No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9780.2204510003696724No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT9130.20579934901585983No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8380.1888935974537684No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7270.16387308514187307No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6740.15192635403799512No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6330.1426845431840518No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA6270.14133208305908448No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT6150.13862716280914983No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5720.12893453191355075No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5280.11901649099712377No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5170.11653698076801702No Hit
CTGGCTGAAAACGGTCACAACGTATGGGCAC4910.11067632022649199No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4540.10233614945586021No Hit

[OK]Adapter Content

Adapter graph