FastQCFastQC Report
Wed 8 May 2024
EGAF00007961682

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961682
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences426804
Total Bases18.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC24590.5761426790751727No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT18980.4447006119905155No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA18230.4271281431289304No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA17780.41658466181197923No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15870.37183344111114236No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14240.3336426087852972No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12640.2961546752139155No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT11470.2687416237898426No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA11210.26264983458449315No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8840.20712083298188394No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8570.2007947441917133No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8280.19400005623190036No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA8040.18837686619619312No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6500.1522947301337382No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6240.14620294092838867No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT5990.14034545130786028No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5920.13870535421411234No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5410.1267560753882344No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5060.11855558991949466No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5010.11738409199538898No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4800.11246380071414513No Hit
CTGGCACAGAGAATCACGGTTGGAGCGTTTGGTCGCTTCGTCCA4630.10848070777218584No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4350.10192031939719402No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)