FastQCFastQC Report
Wed 8 May 2024
EGAF00007961683

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961683
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences426804
Total Bases13.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC32110.7523359668606667No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA29890.7003214590303746No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21640.5070243015529377No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT21140.49530932231188085No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG20030.46930206839673483No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18790.44024891987891396No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG18660.4372030252762392No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC12620.29568607604427327No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12500.2928744810264196No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG12210.2860797930666067No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10670.2499976570041518No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10480.2455459648925502No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10370.24296866945951773No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC9190.2153213184506237No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT8990.210635326754201No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6660.15604352349087636No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA6580.1541691268123073No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6330.1483116371917789No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT6000.14057975089268143No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5780.13542516002661645No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5280.12371018078555965No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC5170.12113288535252716No Hit
CTGGCTGAAAACGGTCACAACGTATGGGCAC4910.11504109614717763No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT4450.10426331524540537No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)