FastQCFastQC Report
Wed 8 May 2024
EGAF00007961685

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961685
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences490762
Total Bases15.2 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT96621.968775088535787No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA40100.8170966782269206No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC19990.4073257505674849No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18460.3761497426451111No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17410.3547544430905408No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14200.2893459558808547No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7500.15282356824693027No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG5660.11533085283701673No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5290.10779155680350148No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)