FastQCFastQC Report
Wed 8 May 2024
EGAF00007961687

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961687
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472021
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT92341.9562688948161204No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA38460.8147942570351743No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22330.47307217263638696No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC18170.3849405005285782No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT17940.38006783596492527No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16370.3468066039434686No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14410.30528302766190485No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7510.15910309075231824No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG5800.12287588899646414No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)