FastQCFastQC Report
Wed 8 May 2024
EGAF00007961689

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961689
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences494777
Total Bases15.3 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT99832.017676650288918No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA40860.8258265845017049No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC19950.4032119520511261No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19570.3955317243930094No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16820.33995112949874384No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA15310.3094323301204381No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7940.16047633580380657No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG5950.12025619622577444No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5570.11257596856765777No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)