FastQCFastQC Report
Wed 8 May 2024
EGAF00007961691

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961691
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473188
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT95452.0171686517832237No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA37910.8011614833850393No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23670.5002240124432572No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC19320.4082943777103392No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18080.3820891484991166No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15980.3377093248349493No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14690.31044743315553225No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8050.170122657379308No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG5600.1183461964377795No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)