FastQCFastQC Report
Wed 8 May 2024
EGAF00007961693

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961693
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences518266
Total Bases16 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA26370.5088120771958802No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18430.3556088958179776No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16590.3201058915691942No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12060.23269903871756975No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11180.21571934103336898No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9500.1833035545453493No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9180.17712911902382175No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8870.17114763461234192No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8300.16014942133962098No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7780.1501159636171387No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG6700.12927724373198318No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6640.12811953707169677No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6350.12252395488031242No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6120.1180860793492145No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5850.11287639937792562No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5530.10670196385639806No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)