FastQCFastQC Report
Wed 8 May 2024
EGAF00007961695

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961695
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences498662
Total Bases15.4 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA25770.5167829110700234No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25600.5133737882573768No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17670.35434823587921277No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15820.3172489582121758No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11540.23141927798789563No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10430.20915971138767342No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9520.19091087750821195No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8750.17546955653328306No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8590.17226097035667445No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8020.1608303821025063No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7610.15260838002494675No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG6470.12974720351661045No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6010.1205225182588607No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5990.12012144498678465No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5650.11330319936149134No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5440.10909193000469256No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5310.10648495373619807No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)