FastQCFastQC Report
Wed 8 May 2024
EGAF00007961697

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961697
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences519836
Total Bases16.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA27740.5336298371024708No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT18010.3464554205557137No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16250.31259858878569396No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11970.2302649297086004No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11860.22814887772297418No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10000.19236836232965782No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9240.1777483667926038No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8790.16909179048776923No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8760.16851468540078024No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7320.14081364122530954No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6490.12484706715194792No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6420.12350048861564031No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5880.1131125970498388No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5810.1117660185135312No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5790.11138128178887188No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG5760.1108041767018829No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)