FastQCFastQC Report
Wed 8 May 2024
EGAF00007961699

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961699
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences501124
Total Bases15.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA26970.5381901485460684No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG25140.5016722408026756No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT17720.3536050957447658No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15540.3101028887061885No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10840.21631372674228333No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10670.21292135279890803No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9270.18498415561817036No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9200.18358729575913346No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8660.17281151970370606No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7840.15644830421213113No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7430.14826669646634366No Hit
AAACTGTCCTCTGGCTACCGCATCAACCGTG6500.1297084154819965No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6190.1235223218205474No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6040.1205290506940398No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5790.11554026548319378No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5350.1067600035121048No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5300.10576224646993558No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)