FastQCFastQC Report
Wed 8 May 2024
EGAF00007961701

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961701
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences471729
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28040.5944090780935665No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11850.251203551191468No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10920.23148884211061863No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC9140.19375531290211118No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7980.16916492308083667No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC7930.16810499248509206No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7120.15093411683402969No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6240.1322793383489249No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6050.12825160208509548No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5630.11934818508084091No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5420.11489647657871363No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5410.1146844904595647No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA4720.10005744823828935No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)