FastQCFastQC Report
Wed 8 May 2024
EGAF00007961703

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961703
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453145
Total Bases14 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26460.5839190546072449No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21850.48218561387635306No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11380.2511337430623752No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10370.22884507166580234No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC8620.19022608657273057No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC7670.16926149466506304No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7090.156462059605645No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6810.1502830219907535No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6300.1390283463350583No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5760.12711163093491046No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5640.12446347195709982No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5180.11431219587549239No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4860.1072504386013307No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)