FastQCFastQC Report
Wed 8 May 2024
EGAF00007961705

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961705
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences473450
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27670.5844334142992924No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11870.2507128524659415No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10970.23170345337416837No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC8700.18375752455380714No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7820.1651705565529623No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7800.16474812546203402No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC7720.16305840109832082No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6910.145949941915725No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG6030.12736297391488013No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5780.12208258527827648No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5670.11975921427817086No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5070.1070862815503221No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4740.10011616855000527No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)