FastQCFastQC Report
Wed 8 May 2024
EGAF00007961707

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961707
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456894
Total Bases14.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT27330.5981693784553966No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22560.4937687953879893No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10800.23637867864318637No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10720.23462772546805166No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC8750.19151050353035934No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC7990.17487644836657956No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7050.15430274855874668No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6950.15211405708982828No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6600.1444536369486139No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5490.12015916164361976No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5100.11162326491483802No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4830.10571379794875836No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4800.10505719050808283No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA4660.1019930224515971No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)