FastQCFastQC Report
Wed 8 May 2024
EGAF00007961710

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961710
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences438247
Total Bases19.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6680.1524254587025125No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6110.13941909471142985No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT4690.10701727564592571No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG4440.10131273003580173No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)