FastQCFastQC Report
Wed 8 May 2024
EGAF00007961714

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961714
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440628
Total Bases19.3 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6560.14887841898381401No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5430.12323320351861433No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5380.12209845947148161No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)