FastQCFastQC Report
Wed 8 May 2024
EGAF00007961716

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961716
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468948
Total Bases20.6 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8360.17827136484215733No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7140.1522556871977277No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6840.14585838941631055No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6460.13775514555984886No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5860.1249605499970146No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5320.11344541399046376No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5310.11323217073108319No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)