FastQCFastQC Report
Wed 8 May 2024
EGAF00007961717

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961717
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences468948
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15810.33713759308068275No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8800.18765406825490247No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8440.1799773109172019No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6190.13199757755657343No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5960.1270929825908203No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5790.12346784718135059No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5610.11962946851250032No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)