FastQCFastQC Report
Wed 8 May 2024
EGAF00007961719

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961719
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences450579
Total Bases13.9 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22750.504905909951418No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15570.3455553854041134No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8470.18798035416652795No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8420.18687067084795342No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5970.13249618823780068No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5560.12339678502548944No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5070.11252188850345889No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)