FastQCFastQC Report
Wed 8 May 2024
EGAF00007961720

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961720
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472343
Total Bases20.7 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8470.1793188424513542No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7380.15624239165182927No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6680.1414226526062628No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6080.12872001913863443No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5680.12025159682688216No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5410.11453541176644937No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4770.10098593606764575No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)