FastQCFastQC Report
Wed 8 May 2024
EGAF00007961721

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961721
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472343
Total Bases14.6 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT15560.3294216279271631No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9360.19816108209500302No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8450.17889542133576658No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6250.13231909862112914No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5920.12533265021393353No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5870.1242740974249645No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5160.10924264782160421No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4830.1022561994144086No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)