FastQCFastQC Report
Wed 8 May 2024
EGAF00007961723

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961723
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453584
Total Bases14 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG23110.5094976895128576No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16840.37126530036332855No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8770.1933489717450351No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8430.18585311651204628No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6370.14043705245334934No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5450.12015415005820311No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4860.1071466365656637No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4760.10494197326184344No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)