FastQCFastQC Report
Wed 8 May 2024
EGAF00007961725

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961725
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470118
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11980.2548296385162874No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8620.1833582207020365No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8540.18165652027788767No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6570.13975214733322272No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6420.13656145903794364No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5610.11933174224343676No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5360.11401392841797166No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5150.10954696480458097No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4890.10401643842609727No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)