FastQCFastQC Report
Wed 8 May 2024
EGAF00007961727

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961727
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451785
Total Bases14 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22150.4902774549841185No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11280.2496762840731764No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8030.1777394114457098No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7710.1706563962946977No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6130.13568400898657548No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5680.1257235189304647No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5380.11908319222639087No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5320.1177551268855761No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4870.10779463682946534No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)