FastQCFastQC Report
Wed 8 May 2024
EGAF00007961729

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961729
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470082
Total Bases14.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11510.24485089835390422No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8820.18762683957267032No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8230.17507583783254838No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6130.13040278079143638No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6090.12955186541922473No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5780.12295727128458439No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5670.12061725401100233No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5210.11083172723056829No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5030.10700260805561583No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)