FastQCFastQC Report
Wed 8 May 2024
EGAF00007961731

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961731
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences453913
Total Bases14 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22690.4998755268080007No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11810.2601820172588139No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8370.1843965693866446No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7440.1639080616770174No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6120.13482759912141754No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5980.13174330763824785No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5550.12227012665422668No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5400.11896552863654489No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC4840.10662836270386615No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)