FastQCFastQC Report
Wed 8 May 2024
EGAF00007961733

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961733
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences451691
Total Bases14 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13460.2979913259285662No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9880.21873360328188962No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6860.1518737366916764No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5460.12087909655051794No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5330.11800102282312466No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5170.11445877823556369No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5010.11091653364800273No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5000.11069514336128015No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG4710.1042748250463259No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4520.10006840959859728No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)