FastQCFastQC Report
Wed 8 May 2024
EGAF00007961734

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961734
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435633
Total Bases19.1 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12100.2777567356008383No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7190.16504718421239897No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6240.1432398372024158No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4970.11408685751538566No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4920.11293910240959706No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4650.1067412248383387No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT4550.10444571462676151No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)