FastQCFastQC Report
Wed 8 May 2024
EGAF00007961735

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961735
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences435633
Total Bases13.5 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21750.4992734710180359No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12320.2828068580663081No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9230.21187559252857338No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6410.14714220456209698No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5700.13084408205989903No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5170.11867787793854001No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5150.11821877589622458No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4760.10926628607107358No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)