FastQCFastQC Report
Wed 8 May 2024
EGAF00007961736

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961736
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456259
Total Bases20 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12830.28119993249448233No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7480.1639419715556296No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6220.13632607795133905No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5580.12229895739042956No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT5490.12032639356155167No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5150.1128744857635685No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)