FastQCFastQC Report
Wed 8 May 2024
EGAF00007961737

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961737
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences456259
Total Bases14.1 Mbp
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12970.28426836511718123No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9880.21654367365904018No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6580.14421633326685063No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6150.13479186163998955No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5680.12449069497807166No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5600.12273730490795798No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG5500.12054556732031588No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5060.1109019219346906No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)