FastQCFastQC Report
Wed 8 May 2024
EGAF00007961738

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007961738
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences436593
Total Bases19.2 Mbp
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13010.29798920275863333No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7520.17224279821252286No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6090.13948918099923727No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5220.11956215514220336No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4770.10925507280235827No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4730.10833888770548314No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT4690.10742270260860802No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)